AI-Designed Proteins for a New Era of Medicine

Fusiomica harnesses advanced protein design to create de novo binders that diagnose and treat disease with unprecedented precision and speed.

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Technology — How It Works

Fusiomica is a protein engineering company specialising in the design of de novo mini-protein binders. Leveraging state-of-the-art genAI algorithms, we generate ultra-stable, high-affinity proteins that bind targets inaccessible to antibodies. Unlike natural antibodies (~150 kDa), our binders are 8–15 kDa, enabling rapid tissue penetration, fast clearance, and precise targeting. They are produced in E. coli at very high yields and remain folded up to 95 °C. A single engineered cysteine permits site-specific conjugation of radionuclides, fluorophores, or drugs. The result is a versatile platform that delivers cost-effective imaging probes, biopharmaceuticals, diagnostic, and research reagents.

Diffusion model illustration

Why de novo Binders?

  • Precision design. Exact binding sites are built in silico for tailored target recognition.
  • Cost-effective production. Bacterial expression yields monomeric proteins at a fraction of mammalian culture costs.
  • Enhanced penetration. Small size facilitates access to densely packed tissues and across biological barriers.
  • Superior stability. AI-optimised hydrophobic cores confer high thermostability and resistance to denaturants.
  • Simplified IP. Synthetic sequences avoid crowded antibody patent landscapes.
  • De-immunisation. Designs screened to remove MHC II binding sequences.

How We Design

  • Generative scaffolding. Diffusion models propose shape-complementary folds to target epitopes.
  • Physics-aware filters. Interface ΔG, buried surface area, shape complementarity, and H-bond satisfaction.
  • Sequence optimisation. Deep-learning based sequence redesign for expression, stability, and solubility.
  • Manufacturability gates. Cys placement for site-specific conjugation and de-immunisation screens.

Our Offer

We partner with pharmaceutical, biotech, and diagnostic organisations to design bespoke binders and deliver experimentally validated constructs. Engagement models include fee-for-service, shared-risk with success fees, and full IP transfer.

Binder discovery

Binder Discovery

Computational generation of hundreds to thousands of candidate binders using structure-guided design and deep generative models. Rigorous in silico screening identifies hits with desired epitope specificity.

Production

Hit to Lead

Expression and purification in E. coli, followed by binding assays (HPLC, SPR, ELISA) to confirm on-target affinity. Lead molecules are affinity-matured to sub-nanomolar range and assessed for stability, solubility, and manufacturability.

Labeling/Functionalisation

Functionalisation

Site-specific conjugation of radionuclides, fluorophores, or payloads via engineered cysteines or unnatural amino acids. Fusion to Fc domains extends half-life when required. Final constructs are ready for pre-clinical imaging, therapeutic, or diagnostic applications.

Case Study: Patent-Pending Probe Generated in Weeks

To showcase the power of our platform, we pursued a self-funded proof-of-concept programme against a challenging cancer marker (“Target 1”). With a limited bootstrapped budget, our scientists generated multiple binder designs in silico and synthesised the top candidates. Experimental testing confirmed binding for more than 40% of the designs. The selected binder exhibits nanomolar affinity and no unfolding up to 95 °C. Production in E. coli yields >100 mg·L⁻¹ of pure protein.

A single cysteine residue, absent from the natural scaffold, allows site-specific attachment of radionuclides, fluorophores, or cytotoxins. This binder forms the basis of a European patent application (EP25461534). The entire project was executed 10× cheaper and 80% faster than a comparable antibody discovery campaign.

Project Highlights

  • Bootstrapped funding. 100% company-funded.
  • Major unmet need. Target associated with millions of patients per year.
  • >40% hit rate. High confirmation rate from in silico design to wet lab.
  • Patent pending. Composition-of-matter and use claims.
  • Scalable platform. Lessons generalise across our pipeline.

Experimental Validation

Representative data show purity, binding kinetics, and thermostability (target labels redacted).

SDS-PAGE analysis of purified binder and complex

Purity assessment. Coomassie-stained SDS-PAGE confirms single bands at expected molecular weights.

Size-exclusion chromatography trace

Monodispersity. Analytical SEC shows a sharp main peak with minimal aggregation.

MicroScale Thermophoresis binding traces

Equilibrium binding. MST traces and binding isotherm demonstrate nanomolar affinity with saturable behaviour.

Applications

GPCR-targeted

GPCR-Targeted Binders

GPCR epitopes are buried in flexible extracellular loops and adopt multiple conformations. Our mini-proteins penetrate these loops and can stabilise specific receptor states or block ligand binding.

Diagnostic/Biosensor

Diagnostic Reagents

Binders are ideally suited where stability, specificity, and ease of production are essential.

CAR-T

CAR-T Cell Engineering

De novo binders offer compact, human-sequence-free recognition domains for cell therapies.

Bispecifics

Bispecific & Multispecific Formats

Combining multiple de novo binders enables advanced bispecific, multispecific, and bifunctional molecules.

ADC Formats

ADC Formats

Site-specific cysteine engineering enables precise conjugation of cytotoxic payloads for targeted therapies.

Fusion Proteins

Fusion Proteins & Functional Extensions

De novo binders can be fused to additional domains to add new biological functions or pharmacological properties.

Pipeline

We are advancing a diversified portfolio of binder programs, each representing a high-value opportunity in oncology or immunology. Our goal is to develop these de novo binders into next-generation PET probes and theranostics, enabling targeted imaging and therapy.

PET imaging illustration

De novo Binders as PET Probes & Theranostics

Our de novo binders are being developed into targeted PET probes that act like a molecular biopsy. These small, stable proteins enable same-day, high-contrast imaging and can be converted into theranostic agents by swapping the imaging isotope for a therapeutic radionuclide. This approach allows:

  • Whole-body biopsy. Binding probes map antigen expression across all lesions, guiding therapeutic decisions.
  • Same-day imaging. Small binders clear rapidly from circulation, permitting high-contrast imaging in less than three hours instead of the multi-day delay required for antibodies.
  • Dual-use modality. The same binder can deliver therapy by swapping the imaging isotope for a therapeutic radionuclide, creating a theranostic pair.
  • Reduced invasiveness. By obviating surgical biopsies and lowering radioactive dose, binder-based PET improves patient comfort and safety.
Target 1
Lead Optimisation
Epithelial origin tumours
Target 2
Hit Generation
Splicing isoform, breast
Target 3
Target Selection
Gastric cancer

Note: “Target selection” means prioritisation of new antigens; “Hit generation” is initial binder discovery; “Lead optimisation” involves affinity, stability, and manufacturability engineering.

Contact Us

Ready to explore how our binder technology can benefit your project? Send us a message and we’ll get back to you shortly.

Email:

Correspondence address: Szlak 77/222, 31-153 Kraków

Deliveries address: MCB UJ, Gronostajowa 7a, 30-387 Kraków | Poland